Frontiers in Plant Science · 2022 · 25 citations · 42 references
Life SciencesPlant BiologyPlant SciencesAllelopathyPlant BiochemistryPlant EvolutionAllelopathic MechanismsCytochrome P450 EnzymesPhenylpropanoid BiosynthesisPlant MetabolomicsSecondary Metabolite BiosynthesisTerpenoid BiosynthesisCytochrome P450 Enzymes In Phenylpropanoid MetabolismCytochrome P450 IsoenzymesCytochrome P450 MonooxygenasesInvasive Plant CompositionMetabolome AnnotationMonoterpene BiosynthesisTranscriptome SequencingTriterpene Biosynthesis
The tree of heaven, Ailanthus altissima ( MILL .) SWINGLE , is a globally invasive plant known to secrete allelopathic metabolites called quassinoids. Quassinoids are highly modified triterpenoids. So far, nothing has been known about the biochemical basis of quassinoid biosynthesis. Here, based on transcriptome and metabolome data of Ailanthus altissima , we present the first three steps of quassinoid biosynthesis, which are catalysed by an oxidosqualene cyclase and two cytochrome P450 monooxygenases, resulting in the formation of the protolimonoid melianol. Strikingly, these steps are identical to the first steps of the biosynthesis of limonoids, structurally different triterpenoids from sister plant families within the same order Sapindales. Our results are therefore not only important to fully understand the biosynthesis of complex triterpenoids in plants, but also confirm the long-standing hypothesis that quassinoids and limonoids share an evolutionary origin. In addition, our transcriptome data for Ailanthus altissima will be beneficial to other researchers investigating the physiology and ecology of this invasive tree.
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BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simão, Robert M. Waterhouse, Panagiotis Ioannidis et al. · Bioinformatics · 2015 · 14.5K citations · Full text
Salmon provides fast and bias-aware quantification of transcript expression
Rob Patro, Geet Duggal, Michael I. Love et al. · Nature Methods · 2017 · 13.7K citations · Full text