Microbiome · 2023 · 57 citations · 51 references
51
R: A Language and Environment for Statistical Computing
R Core Team · 2000 · 352.8K citations · Full text
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
Paul Shannon, Andrew Markiel, Owen Ozier et al. · Genome Research · 2003 · 52.1K citations · Full text
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
Christian Quast, Elmar Pruesse, Pelin Yilmaz et al. · Nucleic Acids Research · 2012 · 32.2K citations · Full text
Ribosomal Rna, Genetics, Genomics +20
Search and clustering orders of magnitude faster than BLAST
R. C. Edgar · Bioinformatics · 2010 · 21.1K citations · Full text
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
Morgan N. Price, Paramvir Dehal, Adam P. Arkin · PLoS ONE · 2010 · 15.1K citations · Full text