Nucleic Acids Research · 2022 · 24 citations · 53 references
Life SciencesBiochemistryMolecular BiologyNuclear OrganizationNucleic Acid BiochemistryRna ProcessingMacromolecular AssemblyProtein CondensatesProtein StructureRna StructureRna-binding ProteinsSmall Nuclear Rna BiologyHeterogeneous Nuclear RibonucleoproteinsIntrinsically Disordered RegionsProtein-rna Complex StructureProtein-rna CondensatesPurificationRna Processing ComplexesSmall Nuclear Ribonucleoprotein ComplexesSmall Nuclear Rnas
Heterogenous nuclear ribonucleoproteins (hnRNPs) are abundant proteins implicated in various steps of RNA processing that assemble on nuclear RNA into larger complexes termed 40S hnRNP particles. Despite their initial discovery 55 years ago, our understanding of these intriguing macromolecular assemblies remains limited. Here, we report the biochemical purification of native 40S hnRNP particles and the determination of their complete protein composition by label-free quantitative mass spectrometry, identifying A-group and C-group hnRNPs as the major protein constituents. Isolated 40S hnRNP particles dissociate upon RNA digestion and can be reconstituted in vitro on defined RNAs in the presence of the individual protein components, demonstrating a scaffolding role for RNA in nucleating particle formation. Finally, we revealed their nanometer scale, condensate-like nature, promoted by intrinsically disordered regions of A-group hnRNPs. Collectively, we identify nuclear 40S hnRNP particles as novel dynamic biomolecular condensates.
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UniProt: a worldwide hub of protein knowledge
Nucleic Acids Research · 2018 · 8.4K citations · Full text
New tools for automated high-resolution cryo-EM structure determination in RELION-3
Jasenko Zivanov, Takanori Nakane, Björn Forsberg et al. · eLife · 2018 · 5.4K citations · Full text
Life Sciences, Bioinformatics, High-performance Computing +14