bioRxiv (Cold Spring Harbor Laboratory) · 2022 · 12 citations · 17 references
ComputingBioinformaticsComputer ScienceDatabasesInformation RetrievalSequence AnalysisMetadata CaptureQuery ProcessingSequence AlignmentSequence AnnotationSequence MiningSequence Similarity SearchCommand-line InterfacesMetadataMetadata IndexingMetadata-based RetrievalMetadata-based SearchRetrieval
Abstract We present a command-line tool, called ffq , for querying user-generated data and metadata from sequence databases. The code can be found here: https://github.com/pachterlab/ffq .
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An integrated encyclopedia of DNA elements in the human genome
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