Nucleic Acids Research · 2013 · 297 citations · 19 references
Life SciencesBiochemistryBioinformaticsStructural BiochemistryStructural BioinformaticsStructural BiologyProtein Database SearchProtein MotifsProtein Sequence AnalysisProtein StructureProtein-ligand RecognitionStructural MotifsProtein Domain AnnotationProtein Domain ClassificationProtein Domain EvolutionProtein Domain OrganizationProtein Sequence Database ConstructionProtein Sequence VisualizationProtein Structure ComparisonProtein-ligand Binding Sites
PDBsum, http://www.ebi.ac.uk/pdbsum, is a website providing numerous pictorial analyses of each entry in the Protein Data Bank. It portrays the structural features of all proteins, DNA and ligands in the entry, as well as depicting the interactions between them. The latest features, described here, include annotation of human protein sequences with their naturally occurring amino acid variants, dynamic graphs showing the relationships between related protein domain architectures, analyses of ligand binding clusters across different experimental determinations of the same protein, analyses of tunnels in proteins and new search options.
19
An integrated map of genetic variation from 1,092 human genomes
dbSNP: the NCBI database of genetic variation
Stephen T. Sherry · Nucleic Acids Research · 2001 · 7.8K citations · Full text
The Pfam protein families database
Marco Punta, Penny Coggill, Ruth Y. Eberhardt et al. · Nucleic Acids Research · 2011 · 3.8K citations · Full text