Concepedia

Metagenomic Profiling of the Ocular Surface Microbiome in Patients After Allogeneic Hematopoietic Stem Cell Transplantation

Jing Li, Qiaoxing Liang, Fen Huang, Yinglin Liao, Wenxin Zhao, Jing Yang, Xiaofeng Wen, Xifang Li, Tingting Chen, Shixin Guo,

American Journal of Ophthalmology · 2022 · 13 citations · 33 references

DOI

Concepts

References

33

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text

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Improved metagenomic analysis with Kraken 2

Derrick E. Wood, Jennifer Lu, Ben Langmead · Genome biology · 2019 · 7.1K citations · Full text

, , +11

Quality control and preprocessing of metagenomic datasets

Robert Schmieder, Robert A. Edwards · Bioinformatics · 2011 · 5.4K citations · Full text

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eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

Jaime Huerta‐Cepas, Damian Szklarczyk, Davide Heller et al. · Nucleic Acids Research · 2018 · 5.3K citations · Full text

, , +17

Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data

Nicole M. Davis, Diana M. Proctor, Susan Holmes et al. · Microbiome · 2018 · 3.5K citations · Full text

, , +16