SoftwareX · 2022 · 10 citations · 54 references
ComputingComputer Science3D ModelingComputational GeometryComputer VisionGeometry ProcessingKinematicsMotion CaptureParticle FilteringParticle MethodsParticle TracingDeformationLagrangian FormulationLagrangian Particle TrackingLarge Deformation ModelingMotion TrackingOpen-source Software DevelopmentParticle TrackingRotational Motion
We present a new particle tracking algorithm for accurately resolving large deformation and rotational motion fields, which takes advantage of both local and global particle tracking algorithms. We call this method ScalE and Rotation Invariant Augmented Lagrangian Particle Tracking (SerialTrack). This method builds an iterative scale and rotation invariant topology-based feature vector for each particle within a multi-scale tracking algorithm. The global kinematic compatibility condition is applied as a global augmented Lagrangian constraint to enhance tracking accuracy. An open source software package implementing this numerical approach to track both 2D and 3D, incremental and cumulative deformation fields is provided.
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TrackMate: An open and extensible platform for single-particle tracking
Jean-Yves Tinévez, Nick Perry, Johannes Schindelin et al. · Methods · 2016 · 3.8K citations · Full text
Robust single-particle tracking in live-cell time-lapse sequences
Khuloud Jaqaman, Dinah Loerke, Marcel Mettlen et al. · Nature Methods · 2008 · 2.1K citations · Full text