Concepedia

Single-cell profiling of transcriptome and histone modifications with EpiDamID

Franka J. Rang, Kim L. de Luca, Sandra S. de Vries, Christian Valdes‐Quezada, Ellen Boele, Phong D. Nguyen, Isabel Guerreiro, Yuko Sato, Hiroshi Kimurâ, Jeroen Bakkers,

Molecular Cell · 2022 · 63 citations · 107 references

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107

Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations

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HTSeq—a Python framework to work with high-throughput sequencing data

Simon Anders, Paul Theodor Pyl, Wolfgang Huber · Bioinformatics · 2014 · 22.7K citations · Full text

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Model-based Analysis of ChIP-Seq (MACS)

Yong Zhang, Tao Liu, Clifford A. Meyer et al. · Genome biology · 2008 · 19.9K citations · Full text

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Comprehensive Integration of Single-Cell Data

Tim Stuart, Andrew Butler, Paul Hoffman et al. · Cell · 2019 · 16.9K citations · Full text

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TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Daehwan Kim, Geo Pertea, Cole Trapnell et al. · Genome biology · 2013 · 13.7K citations · Full text

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