Deciphering the fate of sulfate in one- and two-chamber bioelectrochemical systems

DADA2: High-resolution sample inference from Illumina amplicon data

Benjamin J. Callahan, Paul J. McMurdie, Michael Rosen et al. · Nature Methods · 2016 · 36.3K citations

Life Sciences, Bioinformatics, Genetics +9

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

Christian Quast, Elmar Pruesse, Pelin Yilmaz et al. · Nucleic Acids Research · 2012 · 34K citations · Full text

Life Sciences, Bioinformatics, Microbiology +17

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

Paul J. McMurdie, Susan Holmes · PLoS ONE · 2013 · 22.5K citations · Full text

Life Sciences, Biology, Microbiology +15

MultiQC: summarize analysis results for multiple tools and samples in a single report

Philip Ewels, Måns Magnusson, Sverker Lundin et al. · Bioinformatics · 2016 · 10.4K citations · Full text

Life Sciences, Bioinformatics, Visualization +11

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

J. Gregory Caporaso, Christian L. Lauber, William A. Walters et al. · The ISME Journal · 2012 · 9.1K citations · Full text

Life Sciences, Microbiology, Microbial Ecology +6