PLoS Genetics · 2015 · 98 citations · 18 references
Life SciencesGeneticsMolecular GeneticsCancer GeneticsDna RepairMolecular OncologyCancer Genomic InstabilityCancer GenomicsDna Double-strand Break RepairDna Repair DefectsDouble-strand Break RepairHereditary Cancer SyndromesDna Strand Break RepairFamilial Breast CancerGenomic Stability MaintenanceHelicase Activity In RepairInherited Cancer SusceptibilityMissense MutationsMutationPre-messenger Ribonucleic Acid (Pre-mrna) Splicing
The genetic cause for approximately 80% of familial breast cancer patients is unknown. Here, by sequencing the entire exomes of nine early-onset familial breast cancer patients without BRCA1/2 mutations (diagnosed with breast cancer at or before the age of 35) we found that two index cases carried a potentially deleterious mutation in the RECQL gene (RecQ helicase-like; chr12p12). Recent studies suggested that RECQL is involved in DNA double-strand break repair and it plays an important role in the maintenance of genomic stability. Therefore, we further screened the RECQL gene in an additional 439 unrelated familial breast cancer patients. In total, we found three nonsense mutations leading to a truncated protein of RECQL (p.L128X, p.W172X, and p.Q266X), one mutation affecting mRNA splicing (c.395-2A>G), and five missense mutations disrupting the helicase activity of RECQL (p.A195S, p.R215Q, p.R455C, p.M458K, and p.T562I), as evaluated through an in vitro helicase assay. Taken together, 9 out of 448 BRCA-negative familial breast cancer patients carried a pathogenic mutation of the RECQL gene compared with one of the 1,588 controls (P = 9.14×10-6). Our findings suggest that RECQL is a potential breast cancer susceptibility gene and that mutations in this gene contribute to familial breast cancer development.
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Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text
SNP detection for massively parallel whole-genome resequencing
Ruiqiang Li, Yingrui Li, Xiaodong Fang et al. · Genome Research · 2009 · 957 citations · Full text