Frontiers in Neurology · 2021 · 19 citations · 30 references
MedicineGeneticsMolecular GeneticsEpilepsyHuman GeneticsMedical GeneticsEpilepsy GeneticsEtiology Of EpilepsyGeneralized EpilepsyGenetic DisordersGenetic EpilepsiesNeurogenetic DisordersExome SequencingGenetic Causes Of EpilepsyGenotype-phenotype AssociationsHereditary EpilepsiesJuvenile Absence EpilepsyPhenotype-genotype CorrelationRare Variant DiscoveryWhole Exome Sequencing Studies
Background: Genetic generalized epilepsies (GGE) including childhood absence epilepsy (CAE), juvenile absence epilepsy (JAE), juvenile myoclonic epilepsy (JME), and GGE with tonic–clonic seizures alone (GGE-TCS), are common types of epilepsy mostly determined by a polygenic mode of inheritance. Recent studies showed that susceptibility genes for GGE are numerous, and their variants rare, challenging their identification. In this study, we aimed to assess GGE genetic etiology in a Sudanese population. Methods: We performed whole-exome sequencing (WES) on DNA of 40 patients from 20 Sudanese families with GGE searching for candidate susceptibility variants, which were prioritized by CADD software and functional features of the corresponding gene. We assessed their segregation in 138 individuals and performed genotype–phenotype correlations. Results: In a family including three sibs with GGE-TCS, we identified a rare missense variant in ADGRV1 encoding an adhesion G protein-coupled receptor V1, which was already involved in the autosomal recessive Usher type C syndrome. In addition, five other ADGRV1 rare missense variants were identified in four additional families and absent from 119 Sudanese controls. In one of these families, an ADGRV1 variant was found at a homozygous state, in a female more severely affected than her heterozygous brother, suggesting a gene dosage effect. In the five families, GGE phenotype was statistically associated with ADGRV1 variants (0R = 0.9 10 3 ). Conclusion: This study highly supports, for the first time, the involvement of ADGRV1 missense variants in familial GGE and that ADGRV1 is a susceptibility gene for CAE/JAE and GGE-TCS phenotypes.
30
CADD: predicting the deleteriousness of variants throughout the human genome
Philipp Rentzsch, Daniela Witten, Gregory M. Cooper et al. · Nucleic Acids Research · 2018 · 3.9K citations · Full text
Robert S. Fisher, J. Helen Cross, Jacqueline A. French et al. · Epilepsia · 2017 · 3.4K citations · Full text
Mutation of GABRA1 in an autosomal dominant form of juvenile myoclonic epilepsy
Patrick Cossette, Lidong Liu, Katéri Brisebois et al. · Nature Genetics · 2002 · 653 citations
Mutation of FIG4 causes neurodegeneration in the pale tremor mouse and patients with CMT4J
Clement Y. Chow, Yanling Zhang, James J. Dowling et al. · Nature · 2007 · 511 citations · Full text
Mutations in EFHC1 cause juvenile myoclonic epilepsy
Toshimitsu Suzuki, Antonio V. Delgado‐Escueta, Kripamoy Aguan et al. · Nature Genetics · 2004 · 373 citations