Zenodo (CERN European Organization for Nuclear Research) · 2020 · 19 citations · 0 references
Life SciencesBioinformaticsMicrobiologyMetagenomicsMicrobial EcologyMicrobiome ResearchGut MicrobiotaMetagenomic AnalysisMicrobial Community ProfilingMicrobial PhylogenomicsMicrobiome BiomarkersMicrobiome Data AnalysisEffect Size AnalysisLinear Discriminant AnalysisMicrobial Biomarker DiscoveryMicrobiome Data NormalizationMicrobiota Biomarkers
main data structure: S4 object <code>microbiomeMarker</code> inheited from <code>phyloseq</code> in package phyloseq, used for storing microbiome marker data. LEfSe (Linear discriminant analysis effect size) analysis: <code>lefse()</code>. visualization for lefse results: <code>lefse_barplot()</code>, <code>lefse_cladogram()</code>.