Molecular Cell · 2021 · 39 citations · 48 references
Life SciencesCell BiologyMolecular BiologyChromatin BiologyEpigeneticsEpigenomicsChromatinSingle-cell AnalysisSingle-cell EpigenomicsSingle-cell GenomicsSingle-cell Rna Sequencing AnalysisChromatin AccessibilityMultiplexingMultiplexing TechniquesSingle-cell Chromatin AccessibilitySingle-cell Histone Modification Profiling
48
Fast gapped-read alignment with Bowtie 2
Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations
clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
Guangchuang Yu, Li-Gen Wang, Yanyan Han et al. · OMICS A Journal of Integrative Biology · 2012 · 38.3K citations
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang, Tao Liu, Clifford A. Meyer et al. · Genome biology · 2008 · 19.9K citations · Full text
Comprehensive Integration of Single-Cell Data
Tim Stuart, Andrew Butler, Paul Hoffman et al. · Cell · 2019 · 16.9K citations · Full text
Integrated analysis of multimodal single-cell data
Yuhan Hao, Stephanie Hao, Erica Andersen‐Nissen et al. · Cell · 2021 · 16K citations · Full text