Concepedia

Chronic liver disease enables gut Enterococcus faecalis colonization to promote liver carcinogenesis

Noriho Iida, Eishiro Mizukoshi, Tatsuya Yamashita, Masahiro Yutani, Jun Seishima, Ziyu Wang, Kuniaki Arai, Hikari Okada, Taro Yamashita, Yoshio Sakai,

Nature Cancer · 2021 · 73 citations · 40 references

DOI

Concepts

References

40

The Sequence Alignment/Map format and SAMtools

Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text

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Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations

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Metagenomic biomarker discovery and explanation

Nicola Segata, Jacques Izard, Levi Waldron et al. · Genome biology · 2011 · 16.7K citations · Full text

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Fast and sensitive protein alignment using DIAMOND

Benjamin Buchfink, Chao Xie, Daniel H. Huson · Nature Methods · 2014 · 15.2K citations

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Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB

Todd Z. DeSantis, Philip Hugenholtz, N. Larsen et al. · Applied and Environmental Microbiology · 2006 · 11.2K citations · Full text

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