Molecular Biology Reports · 2021 · 16 citations · 60 references
Life SciencesGeneticsPlant SciencesGene ExpressionPlant BiochemistryTranscriptomicsInsect-plant InteractionsPlant EnzymesPlant Gene ExpressionPlant Small Rna BiologyPlant TranscriptomicsPlant-insect InteractionsPlant Small Interfering RnasTranscriptome AnalysisWhole Transcriptome Analysis
60
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simão, Robert M. Waterhouse, Panagiotis Ioannidis et al. · Bioinformatics · 2015 · 14.5K citations · Full text
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
Daniel R. Zerbino, Ewan Birney · Genome Research · 2008 · 9.7K citations · Full text