Communications Biology · 2021 · 51 citations · 80 references
Life SciencesImmunologyMolecular BiologyHost-pathogen InteractionsInnate ImmunityMetabolismAmino Acid MetabolismInnate Immune ResponseInnate Immune Signaling PathwaysInterferon ResponsesIntracellular SurvivalProtein SynthesisAmino Acid Starvation ResponsesAmino AcidsHistidine BiosynthesisHistidine MetabolismHost Protein InteractionsInterferon Gamma ResponseMycobacterium Tuberculosis InfectionMycobacterium Tuberculosis Pathogenesis
Abstract Intracellular pathogens including Mycobacterium tuberculosis ( Mtb ) have evolved with strategies to uptake amino acids from host cells to fulfil their metabolic requirements. However, Mtb also possesses de novo biosynthesis pathways for all the amino acids. This raises a pertinent question- how does Mtb meet its histidine requirements within an in vivo infection setting? Here, we present a mechanism in which the host, by up-regulating its histidine catabolizing enzymes through interferon gamma (IFN-γ) mediated signalling, exerts an immune response directed at starving the bacillus of intracellular free histidine. However, the wild-type Mtb evades this host immune response by biosynthesizing histidine de novo, whereas a histidine auxotroph fails to multiply. Notably, in an IFN-γ −/− mouse model, the auxotroph exhibits a similar extent of virulence as that of the wild-type. The results augment the current understanding of host- Mtb interactions and highlight the essentiality of Mtb histidine biosynthesis for its pathogenesis.
80
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
Paul Shannon, Andrew Markiel, Owen Ozier et al. · Genome Research · 2003 · 54.3K citations · Full text
fastp: an ultra-fast all-in-one FASTQ preprocessor
Shifu Chen, Yanqing Zhou, Yaru Chen et al. · Bioinformatics · 2018 · 29.7K citations · Full text
MultiQC: summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin et al. · Bioinformatics · 2016 · 10.4K citations · Full text