Proceedings of the National Academy of Sciences · 2021 · 49 citations · 60 references
Noroviruses are the predominant cause of acute gastroenteritis, with a single genotype (GII.4) responsible for the majority of infections. This prevalence is characterized by the periodic emergence of new variants that present substitutions at antigenic sites of the major structural protein (VP1), facilitating escape from herd immunity. Notably, the contribution of intravariant mutations to changes in antigenic properties is unknown. We performed a comprehensive antigenic analysis on a virus-like particle panel representing major chronological GII.4 variants to investigate diversification at the inter- and intravariant level. Immunoassays, neutralization data, and cartography analyses showed antigenic similarities between phylogenetically related variants, with major switches to antigenic properties observed over the evolution of GII.4 variants. Genetic analysis indicated that multiple coevolving amino acid changes-primarily at antigenic sites-are associated with the antigenic diversification of GII.4 variants. These data highlight complexities of the genetic determinants and provide a framework for the antigenic characterization of emerging GII.4 noroviruses.
60
R: A Language and Environment for Statistical Computing
R Core Team · 2000 · 352.8K citations · Full text
HyPhy: hypothesis testing using phylogenies
Sergei L. Kosakovsky Pond, Simon D. W. Frost, Spencer V. Muse · Bioinformatics · 2004 · 3K citations · Full text
Mapping the Antigenic and Genetic Evolution of Influenza Virus
Derek J. Smith, Alan S. Lapedes, J.C. de Jong et al. · Science · 2004 · 1.9K citations
Replication of human noroviruses in stem cell–derived human enteroids
Khalil Ettayebi, Sue E. Crawford, Kosuke Murakami et al. · Science · 2016 · 1.3K citations · Full text