Longitudinal single-cell RNA-seq of hESCs-derived retinal organoids

Integrating single-cell transcriptomic data across different conditions, technologies, and species

Andrew Butler, Paul Hoffman, Peter Smibert et al. · Nature Biotechnology · 2018 · 14.1K citations · Full text

Engineering, Genetics, Multiomics +17

SCANPY: large-scale single-cell gene expression data analysis

F. Alexander Wolf, Philipp Angerer, Fabian J. Theis · Genome biology · 2018 · 8.6K citations · Full text

Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

Edward Y. Chen, Christopher M. Tan, Yan Kou et al. · BMC Bioinformatics · 2013 · 8K citations · Full text

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

Evan Z. Macosko, Anindita Basu, Rahul Satija et al. · Cell · 2015 · 7.6K citations · Full text

Systems Biology, Functional Genomics, Single Cell Sequencing +12

Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells

Allon M. Klein, Linas Mažutis, Ilke Akartuna et al. · Cell · 2015 · 3.6K citations · Full text

Developmental Biology, Single Cell Sequencing, Medicine +12