Applied and Environmental Microbiology · 2021 · 26 citations · 44 references
Life SciencesGeneticsMicrobiologyFood MicrobiologyGenomicsMicrobial GenomicsAnimal GenomicsComparative Microbial GenomicsEnvironmental Microbial GenomicsFoodborne Pathogen DetectionGenome SequencingPathogen GenomicsFoodborne Bacterial PathogensGenomic Characterization Of PathogensWhole-genome Sequencing Analysis
Listeria monocytogenes is a foodborne bacterial pathogen responsible for listeriosis. Whole-genome sequencing has been extensively used in public health and food industries to characterize circulating Listeria isolates, but genomic data on isolates occurring in natural environments and wild animals are still scarce.
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Basic local alignment search tool
Stephen F. Altschul, Warren Gish, Webb Miller et al. · Journal of Molecular Biology · 1990 · 94.5K citations
ModelFinder: fast model selection for accurate phylogenetic estimates
Subha Kalyaanamoorthy, Bùi Quang Minh, Thomas K. F. Wong et al. · Nature Methods · 2017 · 18.8K citations