Science China Life Sciences · 2020 · 59 citations · 80 references
Life SciencesGeneticsMolecular GeneticsGenome EvolutionGenomicsMolecular EvolutionAnimal GeneticsAnimal GenomicsDomestication GeneticsDomestication GenomicsSheep BreedingSynteny AnalysisComparative Genomics Of DomesticationPopulation Genomics Of DomesticationSheep DomesticationY Chromosome GeneticsY-chromosome Analysis
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The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text
MUSCLE: multiple sequence alignment with high accuracy and high throughput
R. C. Edgar · Nucleic Acids Research · 2004 · 46.5K citations · Full text
fastp: an ultra-fast all-in-one FASTQ preprocessor
Shifu Chen, Yanqing Zhou, Yaru Chen et al. · Bioinformatics · 2018 · 29.7K citations · Full text