Single-cell RNA-sequencing reports growth-condition-specific global transcriptomes of individual bacteria

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love, Wolfgang Huber, Simon Anders · Genome biology · 2014 · 94.7K citations · Full text

Smart-seq2 for sensitive full-length transcriptome profiling in single cells

Simone Picelli, Åsa K. Björklund, Omid R. Faridani et al. · Nature Methods · 2013 · 2.5K citations

Bioinformatics, Functional Genomics, Single Cell Sequencing +8

Quantifying <i>E. coli</i> Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

Yuichi Taniguchi, Paul Choi, Gene‐Wei Li et al. · Science · 2010 · 2.1K citations · Full text

Molecular Biology, Single Cells, Escherichia Coli +22

Accounting for technical noise in single-cell RNA-seq experiments

Philip Brennecke, Simon Anders, Jong Kim et al. · Nature Methods · 2013 · 1.1K citations

Single Cell Sequencing, Medicine, Single-cell Genomics +4

An Infection-Relevant Transcriptomic Compendium for Salmonella enterica Serovar Typhimurium

Carsten Kröger, Aoife Colgan, Shabarinath Srikumar et al. · Cell Host & Microbe · 2013 · 525 citations · Full text