Concepedia
Cell Reports · 2020 · 123 citations · 49 references
Open access
49
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis · Bioinformatics · 2014 · 33.3K citations · Full text
Abstract Motivation, Genetics, Genomics +21
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
Matthew D. Kearse, Richard Moir, Amy Wilson et al. · Bioinformatics · 2012 · 20.1K citations · Full text
Prokka: rapid prokaryotic genome annotation
Torsten Seemann · Bioinformatics · 2014 · 18.4K citations
Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega
Fabian Sievers, Andreas Wilm, David Dineen et al. · Molecular Systems Biology · 2011 · 15.7K citations · Full text
Structural Bioinformatics, Scalable Generation, Natural Sciences +11
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks, Michael Imelfort, Connor T. Skennerton et al. · Genome Research · 2015 · 11.8K citations · Full text