Concepedia

Cell type prioritization in single-cell data

Michael A. Skinnider, Jordan W. Squair, Claudia Kathe, Mark A. Anderson, Matthieu Gautier, Kaya J.E. Matson, Marco Milano, Thomas H. Hutson, Quentin Barraud, Aaron A. Phillips,

Nature Biotechnology · 2020 · 269 citations · 54 references

Open access

Concepts

Life SciencesBioinformaticsCell BiologyComputational BiologySingle-cell BioinformaticsSingle-cell Systems BiologyCell ClusteringCell Type AnnotationSingle-cell AnalysisSingle-cell GenomicsSingle-cell Rna Sequencing AnalysisSingle-cell TranscriptomicsCell Type HeterogeneityCell Type MappingCell-type IdentificationCell-type-specific Variant PrioritizationSingle-cell Data Preprocessing

References

54

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +17

Comprehensive Integration of Single-Cell Data

Tim Stuart, Andrew Butler, Paul Hoffman et al. · Cell · 2019 · 16.9K citations · Full text

Life Sciences, Bioinformatics, Cell Biology +14

A Concordance Correlation Coefficient to Evaluate Reproducibility

Biometrics · 1989 · 8.7K citations

Education, Biostatistics, Experimental Design +16

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

Evan Z. Macosko, Anindita Basu, Rahul Satija et al. · Cell · 2015 · 7.8K citations · Full text

Life Sciences, Cell Biology, Molecular Biology +11

Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression

Christoph Hafemeister · Genome biology · 2019 · 4.9K citations · Full text

Life Sciences, Bioinformatics, Biostatistics +16