Phytopathology · 2020 · 25 citations · 23 references
Life SciencesPlant BiologyPlant SciencesComparative GenomicsGenomicsPlant GenomicsComparative Plant GenomicsGenome Evolution In PlantsPathogen GenomicsPlant PathogenesisPlant-pathogen InteractionsPlant-pathogenic FungiGenus DescriptionPhylogeny Of Plant PathogensPlant Pathogen IdentificationWhole-genome Sequence Analysis
Colletotrichum is a large genus of plant pathogenic fungi comprising more than 200 species. In this work, we present the genome sequences of four Colletotrichum species pathogenic to soybean: C. truncatum, C. plurivorum, C. musicola, and C. sojae. While C. truncatum is globally considered the most important pathogen, the other three species have been described and associated with soybean only recently. The genome sequences will provide insights into factors that contribute to pathogenicity toward soybean and will be useful for further research into the evolution of Colletotrichum.
23
FLASH: fast length adjustment of short reads to improve genome assemblies
Tanja Magoč, Steven L. Salzberg · Bioinformatics · 2011 · 15.7K citations · Full text
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simão, Robert M. Waterhouse, Panagiotis Ioannidis et al. · Bioinformatics · 2015 · 14.5K citations · Full text