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DNA methylation disruption reshapes the hematopoietic differentiation landscape

Franco Izzo, Stanley Chun-Wei Lee, Asaf Poran, Ronan Chaligné, Federico Gaiti, Baptiste Gross, Rekha R. Murali, Sunil Deochand, Chelston Ang, Philippa Wyndham Jones,

Nature Genetics · 2020 · 256 citations · 73 references

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73

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love, Wolfgang Huber, Simon Anders · Genome biology · 2014 · 100.5K citations · Full text

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Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations

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STAR: ultrafast universal RNA-seq aligner

Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text

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Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

Sven Heinz, Christopher Benner, Nathanael J. Spann et al. · Molecular Cell · 2010 · 14.6K citations · Full text

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Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

Maxim V. Kuleshov, Matthew R. Jones, Andrew D. Rouillard et al. · Nucleic Acids Research · 2016 · 11.7K citations · Full text

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