mSystems · 2020 · 34 citations · 60 references
Life SciencesBiologyMicrobiologyComparative GenomicsMicrobial EcologyPhylogeneticsArchaeal EvolutionArchaeal SystematicsMicrobial PhylogeneticsMicrobial PhylogenomicsMicrobial PhylogenyMolecular PhylogenyArchaeal Comparative GenomicsArchaeal EcologyArchaeal Metabolic EvolutionComparative Archaeal GenomicsEvolution Of MethanogenesisMethaneMethanogen EvolutionPhylogenomics Of Archaea
Current understanding of the diversity, biology, and ecology of Archaea is very limited, especially considering how few of the known phyla have been cultured or genomically explored. The reconstruction of “ Ca . Methanomixophus” MAGs not only expands the known range of metabolic versatility of the members of Archaeoglobi but also suggests that the phylogenetic distribution of MCR and MTR complexes is even wider than previously anticipated.
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Fast gapped-read alignment with Bowtie 2
Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations
PHYLIP-Phylogeny inference package (Version 3.2)
Joe Felsenstein · Cladistics · 1989 · 17.9K citations
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt, Gwo-Liang Chen, Philip LoCascio et al. · BMC Bioinformatics · 2010 · 13.1K citations · Full text