Viruses · 2020 · 71 citations · 59 references
Life SciencesInfectious DiseasesMicrobiologyMedical MicrobiologyMolecular VirologyVirologyAnimal Infectious DiseasesAnimal VirusesSwine VirologyVeterinary VirologyViral InfectionsViral PathogenesisAnimal Viral PathogenesisIsolationLivestock Viral DiseasesPorcine Circovirus Associated DiseasePorcine CircovirusesViral Pathology In SwineVirus DiseasesVirus Production
Porcine circovirus 3 (PCV3) has been identified as a putative swine pathogen with a subset of infections resulting in stillborn and mummified fetuses, encephalitis and myocarditis in perinatal, and periarteritis in growing pigs. Three PCV3 isolates were isolated from weak-born piglets or elevated stillborn and mummified fetuses. Full-length genome sequences from different passages and isolates (PCV3a1 ISU27734, PCV3a2 ISU58312, PCV3c ISU44806) were determined using metagenomics sequencing. Virus production in cell culture was confirmed by qPCR, IFA, and in situ hybridization. In vivo replication of PCV3 was also demonstrated in CD/CD pigs (n = 8) under experimental conditions. Viremia, first detected at 7 dpi, was detected in all pigs by 28 dpi. IgM antibody response was detected between 7–14 dpi in 5/8 PCV3-inoculated pigs but no IgG seroconversion was detected throughout the study. Pigs presented histological lesion consistent with multi systemic inflammation characterized by myocarditis and systemic perivasculitis. Viral replication was confirmed in all tissues by in situ hybridization. Clinically, all animals were unremarkable throughout the study. Although the clinical relevance of PCV3 remains under debate, this is the first isolation of PCV3 from perinatal and reproductive cases of PCV3-associated disease and in vivo characterization of PCV3 infection in a CD/CD pig model.
59
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text
ABySS: A parallel assembler for short read sequence data
Jared T. Simpson, Kim Wong, Shaun D. Jackman et al. · Genome Research · 2009 · 3.8K citations · Full text
Life Sciences, Biology, Genetics +17
Tanja Opriessnig, Xiang‐Jin Meng, Patrick G. Halbur · Journal of Veterinary Diagnostic Investigation · 2007 · 687 citations · Full text
Veterinary Medicine, Infectious Diseases, Veterinary Microbiology +17