mSphere · 2020 · 44 citations · 36 references
Life SciencesInfectious DiseasesMicrobiologyBacteriologyGenomicsMedical MicrobiologyAntibiotic ResistanceAntibiotic Resistance GeneticsAntimicrobial Resistance GenomicsMicrobial Evolutionary GenomicsPathogen GenomicsVariant TrackingAcinetobacter Baumannii InfectionAcinetobacter Baumannii ResistanceAntibiotic Resistance GenesAntimicrobial Resistance Variant TrackingEmergenceMicrobial Population GenomicsOxacillin ResistanceOxacillinase Carbapenemases
is a major cause of nosocomial infections all over the world. Although many isolates from developed countries have been studied in terms of their genome sequence, isolates from Latin America have been much less studied. In this study, using a population genomics approach considering the whole genomes of 148 isolates, we describe the recent emergence of the lineage ST758 endemic to Latin America and the inception of the OXA-239 carbapenemase. Our study highlights the urgent need to investigate recently emerged lineages of this species in Latin America and elsewhere, as these might harbor novel antibiotic resistance genes.
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Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
Daniel R. Zerbino, Ewan Birney · Genome Research · 2008 · 9.7K citations · Full text
BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
Remco Bouckaert, Joseph Heled, Denise Kühnert et al. · PLoS Computational Biology · 2014 · 7K citations · Full text