Concepedia

Prediction of peptide binding to MHC using machine learning with sequence and structure-based feature sets

Michelle P. Aranha, Catherine Spooner, Omar Demerdash, Bogdan Czejdo, Jeremy C. Smith, Julie C. Mitchell

Biochimica et Biophysica Acta (BBA) - General Subjects · 2020 · 23 citations · 41 references

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Concepts

References

41

<scp>CHARMM</scp>: A program for macromolecular energy, minimization, and dynamics calculations

Bernard R. Brooks, Robert E. Bruccoleri, Barry D. Olafson et al. · Journal of Computational Chemistry · 1983 · 14.9K citations

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WebLogo: A Sequence Logo Generator: Figure 1

Gavin E. Crooks, Gary C. Hon, John‐Marc Chandonia et al. · Genome Research · 2004 · 13K citations · Full text

, , +15

The Varimax Criterion for Analytic Rotation in Factor Analysis

Henry F. Kaiser · Psychometrika · 1958 · 7.6K citations

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DREIDING: a generic force field for molecular simulations

Stephen L. Mayo, Barry D. Olafson, William A. Goddard · The Journal of Physical Chemistry · 1990 · 6.5K citations

, , +15

PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations

T. J. Dolinsky, Jens Erik Nielsen, J. Andrew McCammon et al. · Nucleic Acids Research · 2004 · 3.6K citations · Full text

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