Shrimp disease progression increases the gut bacterial network complexity and abundances of keystone taxa

Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks

Paul Shannon, Andrew Markiel, Owen Ozier et al. · Genome Research · 2003 · 54.3K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +17

Metagenomic biomarker discovery and explanation

Nicola Segata, Jacques Izard, Levi Waldron et al. · Genome biology · 2011 · 16.7K citations · Full text

Life Sciences, Bioinformatics, Microbiology +10

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

Morgan G. I. Langille, Jesse Zaneveld, J. Gregory Caporaso et al. · Nature Biotechnology · 2013 · 9.4K citations · Full text

Life Sciences, Microbiology, Molecular Biology +16

Molecular ecological network analyses

Ye Deng, Yi‐Huei Jiang, Yunfeng Yang et al. · BMC Bioinformatics · 2012 · 3.2K citations · Full text

Life Sciences, Bioinformatics, Ecology +6

Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile

Charlie G. Buffie, Vanni Bucci, Richard R. Stein et al. · Nature · 2014 · 1.9K citations

Life Sciences, Infectious Diseases, Microbiology +14