Whole metagenome sequencing of cecum microbiomes in Ethiopian indigenous chickens from two different altitudes reveals antibiotic resistance genes

Metagenomic biomarker discovery and explanation

Nicola Segata, Jacques Izard, Levi Waldron et al. · Genome biology · 2011 · 16.7K citations · Full text

Life Sciences, Bioinformatics, Microbiology +10

CD-HIT: accelerated for clustering the next-generation sequencing data

LiMin Fu, Beifang Niu, Zhengwei Zhu et al. · Bioinformatics · 2012 · 11.8K citations · Full text

Life Sciences, Bioinformatics, High-performance Computing +12

A human gut microbial gene catalogue established by metagenomic sequencing

Junjie Qin, Ruiqiang Li, Jeroen Raes et al. · Nature · 2010 · 11.7K citations · Full text

Life Sciences, Genetics, Microbiology +17

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

Morgan G. I. Langille, Jesse Zaneveld, J. Gregory Caporaso et al. · Nature Biotechnology · 2013 · 9.4K citations · Full text

Life Sciences, Microbiology, Molecular Biology +16

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

Anna Klindworth, Elmar Pruesse, Timmy Schweer et al. · Nucleic Acids Research · 2012 · 9K citations · Full text

Life Sciences, Microbiology, Molecular Biology +17