Applied and Environmental Microbiology · 2019 · 33 citations · 77 references
Life SciencesBiologyMarine SciencesMarine MicrobiologyMetagenomicsPhycologyMarine ProteomicsPhytoplankton EcologyPlankton BloomsOrganic Nutrient UtilizationPhytoplankton Community CompositionPhytoplankton Functional TraitsPhytoplankton Functional TypesPhytoplankton Species Composition
A deep understanding of the mechanisms driving bloom formation is a prerequisite for effective bloom management. Metaproteomics was applied in this study to reveal the adaptive and responsive strategies of two coexisting phytoplankton species, H. akashiwo and P. donghaiense , during their bloom periods. Metabolic features and niche divergence in light harvesting, as well as carbon, nitrogen, and phosphorus acquisition and assimilation likely promoted the bloom occurrence under different environments. The molecular behaviors of coexisting bloom-causing species will give clues for bloom monitoring and management in the oceans.
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UPARSE: highly accurate OTU sequences from microbial amplicon reads
R. C. Edgar · Nature Methods · 2013 · 17.3K citations
FLASH: fast length adjustment of short reads to improve genome assemblies
Tanja Magoč, Steven L. Salzberg · Bioinformatics · 2011 · 15.7K citations · Full text
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
James R. Cole, Qi Wang, Erick Cardenas et al. · Nucleic Acids Research · 2008 · 4.9K citations · Full text