Neuron · 2019 · 567 citations · 58 references
Life SciencesDevelopmental BiologyNeuroscienceDevelopmental NeurobiologyDevelopmental NeuroscienceTranscriptomicsDevelopmental TranscriptomicsNeural DevelopmentNeurogenesisSingle-cell GenomicsSingle-cell Rna Sequencing AnalysisSingle-cell TranscriptomicsCell Lineage MappingCortical RegionalizationHuman Cell Atlas Cell AnnotationNeuronal Cell Type TranscriptomicsSingle-cell Transcriptomics In Neuroscience
58
The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text
HTSeq—a Python framework to work with high-throughput sequencing data
Simon Anders, Paul Theodor Pyl, Wolfgang Huber · Bioinformatics · 2014 · 22.7K citations · Full text