Proceedings of the National Academy of Sciences · 2017 · 162 citations · 47 references
MedicineMolecular BiologyOncologyMolecular Cell BiologyMolecular OncologySignal TransductionCancer Cell SignalingGene Fusions In CancerHepatocellular CarcinomaLiver CancerOncogenic Signaling PathwaysSignal Transduction In CancerDriver Fusion GenesEnvironmental FactorsHepatocellular Carcinoma PathogenesisKinase Fusion GenesKinase InhibitorsOncogenic Fusion MechanismsOncogenic Fusion ProteinsTherapeutic Targeting Of Fusion Proteins
Significance Efforts to understand and treat fibrolamellar hepatocellular carcinoma (FL-HCC) have been confounded by a lack of models that accurately reflect the genetics and biology of the disease. Here we demonstrate that the Dnajb1–Prkaca gene fusion drives tumorigenesis in mice, and that fusion to DNAJB1 drives FL-HCC initiation more effectively than wild-type PRKACA overexpression. The requirement of the PRKACA kinase domain in tumor initiation establishes the potential utility of kinase inhibitors targeting the fusion. By identifying genetic and environmental factors that can enhance the consistency and aggressiveness of disease progression, we reveal biological characteristics of the disease and advance a robust platform for future preclinical studies.
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Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text