De novo genome sequencing and secretome analysis of Tilletia indica inciting Karnal bunt of wheat provides pathogenesis-related genes

Basic local alignment search tool

Stephen F. Altschul, Warren Gish, Webb Miller et al. · Journal of Molecular Biology · 1990 · 94.5K citations

Life Sciences, Bioinformatics, Sequence Analysis +3

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +13

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich, Sergey Nurk, Dmitry Antipov et al. · Journal of Computational Biology · 2012 · 27.2K citations

Life Sciences, Bioinformatics, Microbiology +17

Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements

Aaron E. Darling, Bob Mau, Frederick R. Blattner et al. · Genome Research · 2004 · 5.2K citations · Full text

Life Sciences, Bioinformatics, Genetics +16

KAAS: an automatic genome annotation and pathway reconstruction server

Yuki Moriya, Masumi Itoh, Shujiro Okuda et al. · Nucleic Acids Research · 2007 · 4.3K citations · Full text

Life Sciences, Bioinformatics, Genetics +17