Virology · 2019 · 21 citations · 41 references
Life SciencesBiologyMicrobiologyIchthyologyMolecular VirologyVirologyAnimal VirusesAquatic VirusesViral Diseases Of WildlifeViral InfectionsViral ZoonosesZoonotic VirusesBunyaviruses In WildlifeEmerging Zoonotic VirusesFish VirologyMass Mortality EventsViral Contamination Of ShellfishViral Disease CausationViral Disease Surveillance
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Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
Fast gapped-read alignment with Bowtie 2
Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations
Cutadapt removes adapter sequences from high-throughput sequencing reads
Marcel Martin · EMBnet journal · 2011 · 35.8K citations · Full text
BLAST+: architecture and applications
Christiam Camacho, George Coulouris, Vahram Avagyan et al. · BMC Bioinformatics · 2009 · 23.2K citations · Full text
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred Grabherr, Brian J. Haas, Moran Yassour et al. · Nature Biotechnology · 2011 · 22.6K citations · Full text