Applied and Environmental Microbiology · 2019 · 89 citations · 68 references
Life SciencesMicrobiologyPlant BiologyMicrobial EcologyMicrobiome ResearchPlant-microbe Interactions16S Ribosomal Ribonucleic Acid AnalysisMicrobial Community DynamicsMicrobial DiversityPlant MicrobiomePlant-associated Microbial CommunitiesRoot MicrobiomeEndophyte Community StructureEndophyte EcologyEndophytic FungiEndophytic Microbial CommunitiesEndophytic MicroorganismsInternal Transcribed Spacer SequencingMicrobial Community CompositionMicrobial Community Structure
Endophytes are particularly fascinating because of their multifaceted lifestyle, i.e., they may exist as either free-living soil microbes or saprobic ones or pathogens. Endophytic communities of halophytes may be different than those in other plants because salinity acts as an environmental filter. At the same time, they may contribute to the host's adaptation to adverse environmental conditions, which may be of importance in agriculture.
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DADA2: High-resolution sample inference from Illumina amplicon data
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The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks
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