Journal of Biological Chemistry · 2019 · 58 citations · 46 references
Life SciencesBiochemistryMolecular BiologyEnzymologyProtein BiochemistryProteomicsFunctional ProteomicsProtein Sequence AnalysisProteolytic EnzymesProteolytic ProcessingSecretome AnalysisExtracellular Matrix ProteinsIsotopic Labeling Of PeptidesN-terminal SequencingNoncollagenous Matrix ProteinsNoncollagenous ProteinsProtease Cleavage SitesProtease Substrate SpecificityWestern Blotting
The protease ADAMTS7 functions in the extracellular matrix (ECM) of the cardiovascular system. However, its physiological substrate specificity and mechanism of regulation remain to be explored. To address this, we conducted an unbiased substrate analysis using terminal amine isotopic labeling of substrates (TAILS). The analysis identified candidate substrates of ADAMTS7 in the human fibroblast secretome, including proteins with a wide range of functions, such as collagenous and noncollagenous extracellular matrix proteins, growth factors, proteases, and cell-surface receptors. It also suggested that autolysis occurs at Glu-729-Val-730 and Glu-732-Ala-733 in the ADAMTS7 Spacer domain, which was corroborated by N-terminal sequencing and Western blotting. Importantly, TAILS also identified proteolysis of the latent TGF-β-binding proteins 3 and 4 (LTBP3/4) at a Glu-Val and Glu-Ala site, respectively. Using purified enzyme and substrate, we confirmed ADAMTS7-catalyzed proteolysis of recombinant LTBP4. Moreover, we identified multiple additional scissile bonds in an N-terminal linker region of LTBP4 that connects fibulin-5/tropoelastin and fibrillin-1-binding regions, which have an important role in elastogenesis. ADAMTS7-mediated cleavage of LTBP4 was efficiently inhibited by the metalloprotease inhibitor TIMP-4, but not by TIMP-1 and less efficiently by TIMP-2 and TIMP-3. As TIMP-4 expression is prevalent in cardiovascular tissues, we propose that TIMP-4 represents the primary endogenous ADAMTS7 inhibitor. In summary, our findings reveal LTBP4 as an ADAMTS7 substrate, whose cleavage may potentially impact elastogenesis in the cardiovascular system. We also identify TIMP-4 as a likely physiological ADAMTS7 inhibitor.
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Comparative Protein Structure Modeling Using MODELLER
Benjamin Webb, Andrej Šali · Current Protocols in Bioinformatics · 2016 · 4.5K citations · Full text
Comparative Protein Structure Modeling Using MODELLER
Narayanan Eswar, Ben Webb, Marc A. Martı́-Renom et al. · Current Protocols in Protein Science · 2007 · 2.9K citations
Frank Desiere · Nucleic Acids Research · 2005 · 916 citations · Full text