Journal of Chemical Theory and Computation · 2019 · 56 citations · 55 references
Natural SciencesChemistryPharmacologyChemical KineticsComputational ChemistryDrug DiscoveryBinding KineticsLigand BindingLigand Binding KineticsMolecular DynamicsProtein-ligand BindingProtein-ligand InteractionsDrug-target Residence KineticsKinetic Binding AnalysisKinetic Data AnalysisKinetic Models Of BindingLigand-receptor KineticsProtein-ligand Binding KineticsResidence Time EstimationResidue-residue Interactions
= 0.79) between the computationally calculated change in water-ligand interaction energy and experimentally determined residence time. Our results indicate that ensemble-based SMD is a rapid, novel, and accurate semi-empirical method for the determination of drug-target relative residence time.
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VMD: Visual molecular dynamics
William Humphrey, Andrew Dalke, Klaus Schulten · Journal of Molecular Graphics · 1996 · 66.6K citations
Development and testing of a general amber force field
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