Clinical and Experimental Dermatology · 2019 · 53 citations · 13 references
Life SciencesDermatologyImmunologyGene ExpressionGene Expression AnalysisTranscriptomicsCytokine BiologyImmunopathology Of SkinInflammatory BiomarkersInflammatory Skin DiseasesInflammatory Skin DisordersInnate Immune ResponseApocrine GlandsCytokine-mediated Skin InflammationHost Antimicrobial PeptidesImmune Pathway AnalysisInnate Immune CytokinesTranscriptome BiomarkersTranscriptome NormalizationType I Interferon Pathways
BACKGROUND: Hidradenitis suppurativa (HS) is a recurrent inflammatory disease of the apocrine sweat glands. Immune dysregulation probably contributes to the pathogenesis of HS. AIM: To harness mRNA expression arrays to investigate the transcriptome profile in HS compared with control skin. METHODS: Pathway Analysis. RESULTS: The antimicrobial peptide Dermcidin and the cytokine regulator interleukin (IL)-37 were both significantly downregulated in the HS specimens (Dermcidin expression log ratio -3.93, expression P = 0.04; IL-37 expression log ratio -3.29, expression P < 0.001). Pathway analysis revealed the interferon-signalling pathway, leucocyte extravasation pathway, T helper 1 and 2 pathways and nuclear factor of activated T cells as the top-five upregulated pathways in the HS samples. CONCLUSION: Evaluation of transcriptome patterns in HS compared with normal skin demonstrated downregulation of the antimicrobial peptide Dermcidin and the innate immune regulator IL-37, as well as upregulation of interferon pathways and pathways of leucocyte activation.
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Paul A. Harris, Robert Taylor, Robert J. Thielke et al. · Journal of Biomedical Informatics · 2008 · 51.7K citations · Full text
Causal analysis approaches in Ingenuity Pathway Analysis
A. Krämer, Jeff Green, Jack Pollard et al. · Bioinformatics · 2013 · 6.1K citations · Full text