Concepedia

Transcriptomics of Arabidopsis sperm cells at single-cell resolution

Chandra Shekhar Misra, Mário R. Santos, Mariana Rafael-Fernandes, Nuno Pimpão Martins, Marta Monteiro, Jörg D. Becker

Plant Reproduction · 2019 · 32 citations · 45 references

DOI

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References

45

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text

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Cutadapt removes adapter sequences from high-throughput sequencing reads

Marcel Martin · EMBnet journal · 2011 · 35.8K citations · Full text

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HISAT: a fast spliced aligner with low memory requirements

Daehwan Kim, Ben Langmead, Steven L. Salzberg · Nature Methods · 2015 · 26.1K citations · Full text

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HTSeq—a Python framework to work with high-throughput sequencing data

Simon Anders, Paul Theodor Pyl, Wolfgang Huber · Bioinformatics · 2014 · 22.7K citations · Full text

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Salmon provides fast and bias-aware quantification of transcript expression

Rob Patro, Geet Duggal, Michael I. Love et al. · Nature Methods · 2017 · 13.7K citations · Full text

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