Journal of Plant Growth Regulation · 2019 · 49 citations · 64 references
Life SciencesPlant BiologyPlant SciencesPlant Molecular BiologyPlant PhysiologyTranscriptomicsAbiotic Stress TolerancePlant Gene ExpressionPlant Transcriptional RegulationPlant TranscriptomicsStress BiochemistryTranscriptomics Of Stress ResponsesBrassica ToxicityCadmium BioaccumulationCadmium Toxicity MechanismsFunctional Genomics Of Stress ToleranceHeavy Metal Stress ToleranceHeavy Metal Toxicity ToleranceTolerance Mechanism ElucidationTranscriptome Profiling
64
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
HTSeq—a Python framework to work with high-throughput sequencing data
Simon Anders, Paul Theodor Pyl, Wolfgang Huber · Bioinformatics · 2014 · 22.7K citations · Full text
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
Mihaela Pertea, Geo Pertea, Corina Antonescu et al. · Nature Biotechnology · 2015 · 15.5K citations · Full text
REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
Fran Supek, Matko Bošnjak, Nives Škunca et al. · PLoS ONE · 2011 · 7K citations · Full text