Journal of the American Chemical Society · 2019 · 72 citations · 52 references
Life SciencesBiochemistryMolecular BiologyProtein BiochemistryProtein FoldingStructural BiologyEnzyme FunctionEnzyme StabilityProtein DenaturationProtein DynamicsProtein MisfoldingProtein StructureAmino AcidsMutational EffectsMutational Effects On StabilityMutational Stability EffectsSuperoxide Dismutase 1Superoxide Dismutase FunctionSurface PropertiesWeak Protein-protein Interactions
In cells, proteins are embedded in a crowded environment that controls their properties via manifold avenues including weak protein-macromolecule interactions. A molecular level understanding of these quinary interactions and their contribution to protein stability, function, and localization in the cell is central to modern structural biology. Using a mutational analysis to quantify the energetic contributions of single amino acids to the stability of the ALS related protein superoxide dismutase I (SOD1) in mammalian cells, we show that quinary interactions destabilize SOD1 by a similar energetic offset for most of the mutants, but there are notable exceptions: Mutants that alter its surface properties can even lead to a stabilization of the protein in the cell as compared to the test tube. In conclusion, quinary interactions can amplify and even reverse the mutational response of proteins, being a key aspect in pathogenic protein misfolding and aggregation.
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Molecular dynamics with coupling to an external bath
Herman J. C. Berendsen, Johan P. M. Postma, Wilfred F. van Gunsteren et al. · The Journal of Chemical Physics · 1984 · 31K citations · Full text
Natural Sciences, Chemistry, Physics +17