Concepedia

Using BEAN-counter to quantify genetic interactions from multiplexed barcode sequencing experiments

Scott W. Simpkins, Raamesh Deshpande, Justin Nelson, Sheena C. Li, Jeff S. Piotrowski, Henry N. Ward, Yoko Yashiroda, Hiroyuki Osada, Minoru Yoshida, Charles Boone,

Nature Protocols · 2019 · 32 citations · 48 references

DOIFull text

Open access

Concepts

References

48

limma powers differential expression analyses for RNA-sequencing and microarray studies

Matthew E. Ritchie, Belinda Phipson, Di Wu et al. · Nucleic Acids Research · 2015 · 43K citations · Full text

, , +17

DADA2: High-resolution sample inference from Illumina amplicon data

Benjamin J. Callahan, Paul J. McMurdie, Michael Rosen et al. · Nature Methods · 2016 · 36.3K citations

, , +9

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

Weizhong Li, Adam Godzik · Bioinformatics · 2006 · 12.1K citations · Full text

, , +11

Robust Locally Weighted Regression and Smoothing Scatterplots

William S. Cleveland · Journal of the American Statistical Association · 1979 · 10.9K citations

, , +13

Adjusting batch effects in microarray expression data using empirical Bayes methods

W. Evan Johnson, Cheng Li, Ariel Rabinovic · Biostatistics · 2006 · 9.1K citations · Full text

, , +12