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Genomic insights into the 2016–2017 cholera epidemic in Yemen

François‐Xavier Weill, Daryl Domman, Elisabeth Njamkepo, Abdullrahman A. Almesbahi, Mona Naji, Samar Saeed Nasher, Ankur Rakesh, Abdullah M. Assiri, Naresh Chand Sharma, Samuel Kariuki,

Nature · 2018 · 192 citations · 24 references

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24

The Sequence Alignment/Map format and SAMtools

Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text

, , +17

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis · Bioinformatics · 2014 · 34.3K citations · Full text

, , +12

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich, Sergey Nurk, Dmitry Antipov et al. · Journal of Computational Biology · 2012 · 27.2K citations

, , +17

Prokka: rapid prokaryotic genome annotation

Torsten Seemann · Bioinformatics · 2014 · 19.6K citations

, , +13

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

Alexei J. Drummond, Marc A. Suchard, Dong Xie et al. · Molecular Biology and Evolution · 2012 · 10.4K citations · Full text

, , +17