Structure · 2018 · 10 citations · 59 references
Life SciencesBiochemistryBioinformaticsCell SignalingComputational BiologySignal TransductionCell Signaling NetworksMembrane ModelingMembrane Protein InteractionsProtein StructureProtein Structure ModelingProtein-protein Interaction ModelingAmino AcidsComputational Modeling Of Membrane Protein InteractionsComputational Prediction ModelsMembrane Protein Interaction ModelingMembrane Protein ModelingMembrane Protein MotifsProtein-protein Interaction PredictionTransmembrane Segment Prediction
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VMD: Visual molecular dynamics
William Humphrey, Andrew Dalke, Klaus Schulten · Journal of Molecular Graphics · 1996 · 66.6K citations
Matplotlib: A 2D Graphics Environment
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Molecular dynamics with coupling to an external bath
Herman J. C. Berendsen, Johan P. M. Postma, Wilfred F. van Gunsteren et al. · The Journal of Chemical Physics · 1984 · 31K citations · Full text
Natural Sciences, Chemistry, Physics +17
A smooth particle mesh Ewald method
Ulrich Essmann, L. Perera, Max L. Berkowitz et al. · The Journal of Chemical Physics · 1995 · 22.9K citations
LINCS: A linear constraint solver for molecular simulations
Berk Hess, Henk Bekker, Herman J. C. Berendsen et al. · Journal of Computational Chemistry · 1997 · 17.1K citations
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