Concepedia

Role of wild birds and environmental contamination in the epidemiology of Salmonella infection in an outdoor pig farm

Alessia De Lucia, André Rabie, Richard P. Smith, Rob Davies, Fabio Ostanello, Dolapo Ajayi, Liljana Petrovska, Francesca Martelli

Veterinary Microbiology · 2018 · 32 citations · 37 references

DOIFull text

Open access

Concepts

References

37

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text

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SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich, Sergey Nurk, Dmitry Antipov et al. · Journal of Computational Biology · 2012 · 27.2K citations

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Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

Ivica Letunić, Peer Bork · Nucleic Acids Research · 2016 · 5.4K citations · Full text

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Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Nicholas J. Croucher, Andrew J. Page, Thomas R. Connor et al. · Nucleic Acids Research · 2014 · 2.9K citations · Full text

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SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments

Andrew J. Page, Ben Taylor, Aidan Delaney et al. · Microbial Genomics · 2016 · 1.3K citations · Full text

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