Concepedia

Exon Junction Complexes Suppress Spurious Splice Sites to Safeguard Transcriptome Integrity

Volker Boehm, Thiago Britto‐Borges, Anna‐Lena Steckelberg, Kusum Singh, Jennifer V. Gerbracht, Elif Gueney, Lorea Blázquez, Janine Altmüller, Christoph Dieterich, Niels H. Gehring

Molecular Cell · 2018 · 96 citations · 55 references

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55

Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations

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STAR: ultrafast universal RNA-seq aligner

Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text

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BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan, Ira M. Hall · Bioinformatics · 2010 · 30.4K citations · Full text

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Analyzing real-time PCR data by the comparative CT method

Thomas D. Schmittgen, Kenneth J. Livak · Nature Protocols · 2008 · 26.7K citations

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StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

Mihaela Pertea, Geo Pertea, Corina Antonescu et al. · Nature Biotechnology · 2015 · 15.5K citations · Full text

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