Concepedia

<i>Clostridioides difficile</i> uses amino acids associated with gut microbial dysbiosis in a subset of patients with diarrhea

Eric Battaglioli, Vanessa L. Hale, Jun Chen, Patricio Jeraldo, Coral Ruiz-Mojica, Bradley A. Schmidt, Vayu Maini Rekdal, Lisa Till, Lutfi Huq, Samuel A. Smits,

Science Translational Medicine · 2018 · 182 citations · 51 references

DOIFull text

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Abstract

Increased amino acids in the dysbiotic gut influences susceptibility to Clostridioides difficile infection in mice and humans.

References

51

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love, Wolfgang Huber, Simon Anders · Genome biology · 2014 · 100.5K citations · Full text

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Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text

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Silhouettes: A graphical aid to the interpretation and validation of cluster analysis

Peter J. Rousseeuw · Journal of Computational and Applied Mathematics · 1987 · 20.7K citations

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Metagenomic biomarker discovery and explanation

Nicola Segata, Jacques Izard, Levi Waldron et al. · Genome biology · 2011 · 16.7K citations · Full text

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Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB

Todd Z. DeSantis, Philip Hugenholtz, N. Larsen et al. · Applied and Environmental Microbiology · 2006 · 11.2K citations · Full text

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