bioRxiv (Cold Spring Harbor Laboratory) · 2018 · 42 citations · 48 references
Life SciencesCell BiologyUrologyGene ExpressionProstate DiseaseTranscriptomicsBenign Prostatic HyperplasiaCell-type-specific TranscriptomicsProstate AnatomyProstate CancerSingle-cell Rna Sequencing AnalysisSingle-cell TranscriptomicsBenign Prostatic Hyperplasia AnatomyCell Type HeterogeneityCell Type MappingMale UrethraProstate HistologyProstatic UrethraSingle-cell Rna SequencingUrethra Anatomy
Summary A cellular anatomy of normal human organs is essential for solving the cellular origins of disease. We report the first comprehensive cellular atlas of the young adult human prostate and prostatic urethra using an iterative process of single cell RNA sequencing and flow cytometry on ~98,000 cells taken from different anatomical regions. Two previously unrecognized epithelial cell types were identified by KRT13 and SCGB1A1 expression and found to be highly similar to hillock and club cells of the proximal lung. It was demonstrated by immunohistochemistry that prostate club and hillock cells are similarly concentrated in the proximal prostate. We also optimized a new flow cytometry antibody panel to improve cell type-specific purification based on newly established cellular markers. The molecular classification, anatomical distribution, and purification methods for each cell type in the human prostate create a powerful new resource for experimental design in human prostate disease.
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The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
KEGG: Kyoto Encyclopedia of Genes and Genomes
Hiroyuki Ogata, Susumu Goto, Kazushige Sato et al. · Nucleic Acids Research · 1999 · 32.4K citations · Full text